Family of bacteria
The Treponemataceae are a family of spirochete bacteria .[4] The clade includes a number of significant pathogens, such as Treponema pallidum , the cause of human syphilis.[5] [6]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[4] and National Center for Biotechnology Information (NCBI).[7]
16S rRNA based LTP _08_2023[8] [9] [10]
120 single copy marker proteins based GTDB 08-RS214[11] [12] [13]
Rectinemataceae
Rectinema Koelschbach et al. 2017
Treponemataceae
Gracilinema Brune et al. 2022
Zuelzera Brune et al. 2022
Breznakiella Song et al. 2022
Helmutkoenigia Brune et al. 2022
Leadbettera Brune et al. 2022
Treponema primitia
Brucepastera Song et al. 2023
Teretinema Song et al. 2023
Treponema Schaudinn 1905
Treponema species-group 2
"Treponematales"
Rectinemataceae
Rectinema
Breznakiellaceae
Treponemataceae
"Ca. Gallitreponema" Gilroy et al. 2021
^ Robinson GH. (1948). "Family II. Treponemataceae Schaudinn". In Breed RS, Murray EGD, Hitchens AP. (eds.). Bergey's Manual of Determinative Bacteriology (6th ed.). Baltimore, MD: The Williams and Wilkins Co. pp. 1051–1058.
^ Skerman VBD, McGowan V, Sneath PHA. (1980). "Approved lists of bacterial names" . Int J Syst Bacteriol . 30 : 225–420. doi :10.1099/00207713-30-1-225 .
^ Koelschbach, Janina S.; Mouttaki, Housna; Pickl, Carolin; Heipieper, Hermann J.; Rachel, Reinhard; Lawson, Paul A.; Meckenstock, Rainer U. (2017). "Rectinema cohabitans gen. nov., sp. nov., a rod-shaped spirochaete isolated from an anaerobic naphthalene-degrading enrichment culture" . International Journal of Systematic and Evolutionary Microbiology . 67 (5): 1288–1295. doi :10.1099/ijsem.0.001799 . PMID 28100313 .
^ a b Euzéby JP, Parte AC. "Treponemataceae" . List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved June 23, 2021 .
^ "Medical Definition of TREPONEMATACEAE" . www.merriam-webster.com . Retrieved 2022-10-12 .
^ "Treponema - an overview | ScienceDirect Topics" . www.sciencedirect.com . Retrieved 2022-10-12 .
^ Sayers; et al. "Treponemataceae" . National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2021-03-20 .
^ "The LTP" . Retrieved 20 November 2023 .
^ "LTP_all tree in newick format" . Retrieved 20 November 2023 .
^ "LTP_08_2023 Release Notes" (PDF) . Retrieved 20 November 2023 .
^ "GTDB release 08-RS214" . Genome Taxonomy Database . Retrieved 10 May 2023 .
^ "bac120_r214.sp_label" . Genome Taxonomy Database . Retrieved 10 May 2023 .
^ "Taxon History" . Genome Taxonomy Database . Retrieved 10 May 2023 .
Terrabacteria BV1, BV3, BV5
others Cyanoprokaryota
Cyanobacteriota
"Margulisiibacteriota"
"Marinamargulisbacteria"
"Riflemargulisbacteria"
"Saganbacteria"
"Termititenacia"
Firmicutes BV3 Low GC
Bacillota
Bacillota A
"Clostridiia "
"Thermoanaerobacteria"
"Thermosediminibacteria"
Bacillota D
Bacillota E
"Sulfobacillia"
"Symbiobacteriia"
"Thermaerobacteria"
Bacillota G
"Hydrogenisporia"
Limnochordia
"Desulfotomaculota"
"Carboxydocellia"
"Carboxydothermia"
"Dehalobacteriia"
"Desulfitobacteriia"
"Desulfotomaculia"
"Moorellia"
"Peptococcia"
"Syntrophomonadia"
"Thermincolia"
"Halanaerobiaeota"
"Selenobacteria"
CPR group Thermotogida
Fusobacterida
Fusobacteriota
"Macinerneyibacteriota"
"Muiribacteriota"
"Rifleibacteriota"
"Walliibacteriota"
Hydrobacteria BV2, BV4
Clade 1
"Aerophobota"
"Auribacterota"
"Ancaeobacteria"
"Auribacteria"
"Erginobacteria"
"Tritonobacteria"
"Desantisiibacteriota"
Elusimicrobiota
Elusimicrobiia
Endomicrobiia
"Firestoneibacteriota"
"Goldiibacteriota"
"Omnitrophota"
"Omnitrophia"
"Velamenicoccia"
"Ratteibacteriota"
Clade 2
"Abyssubacteria"
"Hinthialibacterota"
"Hydrogenedentota"
"Poribacteriota "
"Saltatorellota"
"Sumerlaeota"
Spirochaeto bacteriobiontes PVC group (Planctobacteria)FCB group (Sphingobacteria)
Bacteroidota
Calditrichota
"Cloacimonadota"
"Coatesiibacteriota"
"Cosmopoliota"
"Delongiibacteriota"
"Edwardsiibacteriota"
"Eiseniibacteriota"
"Electryoneota"
"Electryoneia"
"Tariuqbacteria"
"Fermentibacterota"
Fibrobacterota
Gemmatimonadota
Gemmatimonadia
"Glassbacteria"
"Heilongiota"
"Hydrothermota"
"Hydrothermia"
"Stahlbacteria"
"Krumholzibacteriota"
"Latescibacterota"
"Handelsmanbacteria"
"Latescibacteria"
"Neomarinimicrobiota "
"Marinisomatota"
"Tianyaibacteriota"
"Zixiibacteriota "
Proteobacteria BV2
others
"Qinglongiota"
"Salinosulfoleibacteria"
"Teskebacteria"